Chapter 12 (Chapters 10 and 11 appear after chapter 13)
For MS (12.1-12.5), you must be able to interpret a mass spectrum as
follows: 1. identify the peak that corresponds to the molecular ion
(M+), assuming that it has been detected; 2. understand the origin
and significance of the M+1 and M+2 isotope peaks; 3. know how to
recognize the presence of chlorine or bromine; 4. determine one or
more of the most probable molecular formulas (best done after determining
if oxygen shows up in the IR spectrum); and 5. know what causes
fragment ions, why different compounds always have different fragmentation
patterns, and be able to identify one or two of the most obvious fragmentation
products closest in mass to the molecular ion. Succeeding with all
this will require reading the entire chapter and working as many MS spectral
problems as possible. Additional MS problems are available in various
chemistry texts in the library, and at numerous sites on the web devoted
to spectroscopy..
For IR (12.6-12.9), you must be able to interpret an IR spectrum as
follows, from left to right from 4000 cm-1 to 1600 cm-1: 1.
Know how to recognize the presence of NH or OH at 3500(and how to tell
one from the other);
2. unsaturated and saturated CH just to the left and right of 3000;
3. triple bond (nitrile or alkyne) between 2500 and 2200; and 4.
carbonyls 1800-1600 cm-1. In the fingerprint region, the only assignment
needed is the C-O-C ether stretch at 1200-1100 cm-1 (strong). It
is particularly important to be able to determine, from IR, whether or
not your compound contains oxygen. In addition, you should understand how
IR, like MS, can used to "fingerprint" molecules. As with MS, the
material on IR should be read for general understanding, but the "bottom
line" here is being able to interpret IR spectra. Work as many IR
problems as you can, including at the end, problems that combine both IR
and MS data on a single compound. Utilize the many websites devoted to
learning spectroscopy.
Chapter 13
NMR is the single most powerful tool that chemists and biochemists
routinely use for the determination of the structures of organic and bio-organic
compounds (actually X-ray crystallography is more powerful, but cannot
be routinely applied). The technique is applicable to both large
and small molecules, and is, in fact, a major tool for protein structure
determination. The theory of NMR is very complex, and many different
NMR experiments can be run. Your text contains the minimum amount
of descriptive background needed to interpret the simplest, but most common
NMR experiments involving proton and C-13 NMR. Interpretation of
HNMR involves extracting information from the spectrum as follows:
1. The number of discrete resonances (a multiplet is one resonance)
equals the number of chemically different hydrogens (assuming no resonances
overlap); 1. the relative areas for each resonance are proportional
to the relative number of hydrogens producing each resonance; 3.
multiplets give spin-spin splitting information about chemically different
neighboring hydrogens; and 4. the chemical shift of each resonance
is related to the chemical nature of the hydrogen(s). The most obvious
chemical shift data is to be memorized as follows: aldehyde H at
9-10ppm, aromatic H at 8-6.5ppm, alkene H at 6.5-5.5ppm, hydrogens on a
C alpha to a C=O at 2.0-2.2ppm, and saturated H surrounded by no functional
groups is around 1ppm. The region between 4 and 2ppm contains too
many different kinds of hydrogens to memorize easily, but O-CH is most
common. Chemical shift correlation tables are readily available in
texts and on the web. For C-13 NMR, run as fully-decoupled from all
protons, the spectra span from 0 to 200ppm, and show all sharp singlets
for each chemically different kind of carbon. No spin-spin splitting
is observed, and peak areas are not simply related to the relative numbers
of hydrogens. Carbon chemical shifts to memorize are: C=O carbon
between 180 and 220ppm, aromatic carbon around 150-120ppm, alkene carbons
around 100ppm, and saturated carbons between 50 and 10 ppm. Extensive
chemical shift tables are available. As with MS and IR, the key is
to work as many problems as possible, with eventual emphasis upon combination
problems utilizing IR, NMR, and MS.
Chapter 10
10.1 Name simple alkyl halides using halogens as substituents
(fluoro, chloro, bromo, and iodo)
10.2 Notice dipole moments. Why is the C-F dipole moment
less than that of the C-Cl in table 10.1?
10.3 Review addition of HX to alkenes
10.4-10.6 just read it, but know reaction of allyl H with NBS, and
why the allyl radical is resonance stabilized.
10.7 Know reaction of HX with tertiary alcohols, and the reactions
of thionyl bromide and thionyl chloride with primary and secondary alcohols.
The mechanisms will be discussed later, in the chapter on alcohols.
10.8 Know how to prepare a Grignard reagent, and how a Grignard
is an example of an "organometallic" compound.
10.9 Know how to make a Gilman reagent, and how to react it with
an alkyl or aryl halide.
10.10 skip
Summary of reactions (pgs 378 and 379) know how to use all of them.
Suggested problems: 10.18 a,d; 10.19b; 10.21; 10.23 a,d; 10.24 all;
10.30; and 10.38.
Chapter 11
11.1-11.3 just read.
11.4 study this carefully, and utilize the online animation to
visualize the reaction. If you understand, you should be able to
do problems 11.2-11.4 on pages 392 and 393.
11.5 Substrate, leaving group, nucleophile, and solvent all affect
the Sn2 reaction. Try to get a general sense of how and why each
of these four aspects is involved. The key ideas on pages 400 and
401 need to be memorized and understood.
11.6 read
11.7 and 11.8 read and utilize the online animation to visualize this
mechanism, and to understand how it differs from the Sn2 mechanism in terms
of the stereochemical aspects.
11.9 same discussion as 11.5, but here referring to the Sn1 mechanism.
Read, then memorize and understand the key ideas on pages 412 and 413.
The practice problem 11.2 on pages 412 and 413 is worth doing.
11.10 memorize Zaitsev's rule
11.11 read and use animation to visualize the one-step E2 mechanism.
11.12 skip
11.13 read to understand what a kinetic isotope effect is, and how
it applies to the E2 mechanism with elimination from alkyl halides.
11.14 read and visualize to distinguish from E2 picture.
11.15 contains a good summary in Table 11.4. Practice problem
11.4 should be done.
11.16 recaps substitution reactions seen so far
Summary of reactions: For substitution, know it all with entire list
of nucleophiles from page 396. For elimination, only KOH/ethanol
is to be used.
Suggested problems: 11.25 a-d; 11.29; 11.31 all; 11.39; 11.40;
11.54; and 11.63. Also try the molecular modeling exercises on page
439.
Chapter 14
14.1-14.2 Know what a conjugated diene is. Don't be concerned
with how they are prepared. Look carefully at the data in Table 14.1
relating to the extra stability of conjugated dienes.
14.3 Your first introduction to MO theory of carbon pi systems.
Read to know the MO description for the pi system in 1,3-butadiene (table
14.2). Know what is meant by the LUMO and the HOMO, and the antibonding
vs bonding characteristics of the MO's.
14.4 read
14.5 know 1,2 and 1,4 addition reaction, and nature of resonance delocalized
allyl cation intermediate. Do practice problem 14.1.
14.6 skip
14.7 read
14.9 and 14.9 The Diels-Alder reaction is the first example given
of a "pericylic" reaction, as opposed to a free-radical or ionic reaction.
Learn the reaction in terms of the general nature of the diene and dienophile
and the cyclohexene product produced, and also the strong stereochemical
features of the reaction. Work practice problem 14.2 on page 540,
and problem 14.12 on page 542.
14.11-14.13. You need to understand UV/VIS spectroscopy in terms
of the nature of the electronic transitions involved, what molar adsorptivity
refers to, and how absorption of light in the visible region leads to colored
organic compounds. Just read section 14.12. You will not be
asked to interpret UV spectra. In view of the importance of integrated
circuits, you should read the article on "resists" starting on page 548.
Know all keywords on page 550.
Suggested problems: 14.20a; 14.21a; 14.26; 14.31 a,b; 14.32;
14.37b. Also try the Spartan-view exercise 14.61 on page 558.